1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttcttcctctctttcctcagtcttctgatgactcgaatttgttttgttcag
species | Selaginella moellendorffii |
transcript | EFJ27687 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGGEST: gi|169067518|gb|FE475260.1|FE475260
genomic: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
EST: CAGAGTGATGACACCTGCTGAGGAGTCAATCCCACA-GATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGANCA-TACTAAEST: gi|169082641|gb|FE486200.1|FE486200
genomic: CAGAGTGATGACACCTGCTGAGGAGTCAATCC-ACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGA-CAATACTAA
EST: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGGEST: gi|169071278|gb|FE478410.1|FE478410
genomic: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
EST: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAG-TCGCATTTGGEST: gi|169037362|gb|FE443308.1|FE443308
genomic: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
EST: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGGEST: gi|169071277|gb|FE478409.1|FE478409
genomic: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
EST: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGGEST: gi|169112908|gb|FE514660.1|FE514660
genomic: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
EST: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTTAAATCCGAAAGGTCGCATTTGEST: gi|169082642|gb|FE486201.1|FE486201
genomic: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACT-AAATCCGAAAGGTCGCATTTG
EST: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGGEST: gi|169044046|gb|FE451632.1|FE451632
genomic: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
EST: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGGEST: gi|169102323|gb|FE506547.1|FE506547
genomic: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
EST: GAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGGEST: gi|169064650|gb|FE471381.1|FE471381
genomic: GAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
EST: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
genomic: GCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttc ... ttttgttcagACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAGgtcagacttcttcctctctttcctcagtcttctgatgactcgaatttgttttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA