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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGGTCTTACGGAAACCTGTGCCGGTGCAACATTTTCTGAATGGGATGATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcgaaatctctctctgaactttgtctcactctcgggtgcgcattttacag

Basic information

species Selaginella moellendorffii
transcript EFJ26722
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169062087|gb|FE469679.1|FE469679
EST:     ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG                         CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: gi|169102589|gb|FE508568.1|FE508568
EST:     ATATTAGCGTGGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG                         CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: gi|169020953|gb|FE429340.1|FE429340
EST:     ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG                         CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: gi|169088887|gb|FE492865.1|FE492865
EST:     ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGG                         T
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAA-Ggttgtatcga ... cattttacag-
EST: gi|169088887|gb|FE492865.1|FE492865
EST:     ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGG                         T
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAA-Ggttgtatcga ... cattttacag-
EST: gi|169088887|gb|FE492865.1|FE492865
EST:     ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGG                         T
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAA-Ggttgtatcga ... cattttacag-
EST: gi|169098740|gb|FE500252.1|FE500252
EST:     ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG                         CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: gi|169054875|gb|FE463479.1|FE463479
EST:     ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG                         CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: gi|169113591|gb|FE514502.1|FE514502
EST:     ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG                         CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 22 (upstream exon), 33 (downstream exon)
Score: 12

TTATGGTCTTACGGAAACCTGTGCCGGTGCAACATTTTCTGAATGGGATGATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTAGAGGAGAAATTGTCATTGGCGGCCCCAGTGTTACATTGGGATACTTCA




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