1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTCCTGGAAGATCTAGTAAAAGTTTGCGTGAGCAGAGGCTACGTCTTTCAAATGGAGCTCATCGTAAGAGCGTCGAGAAGCAACTATCGCATCGAAGAGgtacgcatttgtttcagctcttgagcttgttctctaaggattttttcattgaatcag
species | Selaginella moellendorffii |
transcript | EFJ26177 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAATGGAGCTCATCGTAAGAGCGTCGAGAAGCAACTATCGCATCGAAGAG GTGCCTATTACTTTTGTGGATAGAGTTTACGGCATTTCAAAGCTGGGAGGAEST: gi|70670772|gb|DN839349.1|DN839349
genomic: AAATGGAGCTCATCGTAAGAGCGTCGAGAAGCAACTATCGCATCGAAGAGgtacgcattt ... attgaatcagGTGCCTATTACTTTTGTGGATAGAGTTTACGGCATTTCAAAGCTGGGAGGA
EST: AAATGGAGCTCATCGTAAGAGCGTCGAGAAGCAACTATCGCATCGAAGAG GTGCCTATTACTTTTGTGGATAGAGTTTACGGCATTTCAAAGCTGGGAGGA
genomic: AAATGGAGCTCATCGTAAGAGCGTCGAGAAGCAACTATCGCATCGAAGAGgtacgcattt ... attgaatcagGTGCCTATTACTTTTGTGGATAGAGTTTACGGCATTTCAAAGCTGGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCCTGGAAGATCTAGTAAAAGTTTGCGTGAGCAGAGGCTACGTCTTTCAAATGGAGCTCATCGTAAGAGCGTCGAGAAGCAACTATCGCATCGAAGAGgtacgcatttgtttcagctcttgagcttgttctctaaggattttttcattgaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA