1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGCTCCAAGCGCCTCTACCGTTCCTTTCCAGCCTTCTCCTGGCATGCTCCAACCCGACGAGCAGATGCGTCGGCAGATGAAAGATCCAGCAATGCGAGAGgtacaaaagtcgtttgcttttttcattccctgtgggtgacatgtgtgttttctttgcag
species | Selaginella moellendorffii |
transcript | EFJ23762 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACCCGACGAGCAGATGCGTCGGCAGATGAAAGATCCAGCAATGCGAGAG CTCATGTCATCGATGATCAAGAGCATGACACCCGAATCGATGGCCAGTATGEST: gi|169116297|gb|FE517244.1|FE517244
genomic: AACCCGACGAGCAGATGCGTCGGCAGATGAAAGATCCAGCAATGCGAGAGgtacaaaagt ... ttctttgcagCTCATGTCATCGATGATCAAGAGCATGACACCCGAATCGATGGCCAGTATG
EST: AACCCGACGAGCAGATGCGTCGGCAGATGAAAGATCCAGCAATGCGAGAG CTCATGTCATCGATGATCAAGAGCATGACACCCGAATCGATGGCCAGTATGEST: gi|169093336|gb|FE491860.1|FE491860
genomic: AACCCGACGAGCAGATGCGTCGGCAGATGAAAGATCCAGCAATGCGAGAGgtacaaaagt ... ttctttgcagCTCATGTCATCGATGATCAAGAGCATGACACCCGAATCGATGGCCAGTATG
EST: AACCCGACGAGCAGATGCGTCGGCAGATGAAAGATCCAGCAATGCGAGAG CTCATGTCATCGATGATCAAGAGCATGACACCCGAATCGATGGCCAGTATG
genomic: AACCCGACGAGCAGATGCGTCGGCAGATGAAAGATCCAGCAATGCGAGAGgtacaaaagt ... ttctttgcagCTCATGTCATCGATGATCAAGAGCATGACACCCGAATCGATGGCCAGTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCCAAGCGCCTCTACCGTTCCTTTCCAGCCTTCTCCTGGCATGCTCCAACCCGACGAGCAGATGCGTCGGCAGATGAAAGATCCAGCAATGCGAGAGgtacaaaagtcgtttgcttttttcattccctgtgggtgacatgtgtgttttctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG