1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTGGGAAAGAATACTTGAGGAACCACATGACGCCGAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtatttcttctttttctatcttcgccaccgacctttggcttgtcaccatcttctttgcag
species | Selaginella moellendorffii |
transcript | EFJ23445 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169075490|gb|FE482500.1|FE482500
genomic: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169115590|gb|FE517800.1|FE517800
genomic: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169115591|gb|FE517801.1|FE517801
genomic: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169049097|gb|FE457085.1|FE457085
genomic: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: AATCAAAGGGTCATTACCAAAGGCTATACTTTNCA-GAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169043087|gb|FE454001.1|FE454001
genomic: AATCAAAGGGTCATTACCAAAGGCTATACTTT-CAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: GAATCANAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169059656|gb|FE468890.1|FE468890
genomic: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: AATCAAAGGGTCATTACCAAAGGCTATACTNTTCA-GAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169102888|gb|FE505253.1|FE505253
genomic: AATCAAAGGGTCATTACCAAAGGCTATACT-TTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169103837|gb|FE508347.1|FE508347
genomic: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169075489|gb|FE482499.1|FE482499
genomic: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTGEST: gi|169059655|gb|FE468889.1|FE468889
genomic: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
EST: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCC CGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
genomic: GAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtattt ... ttctttgcagCGATTCTCTCGACGAAGATCGTCCCCCTCCGCGACAGAGTGGACGTCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGGAAAGAATACTTGAGGAACCACATGACGCCGAATCAAAGGGTCATTACCAAAGGCTATACTTTCAAGAGGGGCCACACCCgtgagtatttcttctttttctatcttcgccaccgacctttggcttgtcaccatcttctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG