1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTGTTCTTGATGCTACAAAGATTTCCCATCGAATCAAAGGGCCGCAGGAAAAAGCTGCGTGAGgtaattacatcagtctctttcacggcatcttatcctactcagctgttttgtag
species | Selaginella moellendorffii |
transcript | EFJ23006 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TACAAAGATTTCCCATCGAATCAAAGGGCCGCAGGAAAAAGCTGCGTGAG GTCGGCCTTGTGACTGCTATATGCTTCACTTGCTTTACAATCAGATCCGGAEST: gi|169087157|gb|FE493104.1|FE493104
genomic: TACAAAGATTTCCCATCGAATCAAAGGGCCGCAGGAAAAAGCTGCGTGAGgtaattacat ... tgttttgtagGTCGGCCTTGTGACTGCTATATGCTTCACTTGCTTTACAATCAGATCCGGA
EST: TACAAAGATTTCCCATCGAATCAAAGGGCCGCAGGAAAAAGCTGCGTGAG GTCGGCCTTGTGACTGCTATATGCTTCACTTGCTTTACAATCAGATCCGGAEST: gi|70670999|gb|DN839576.1|DN839576
genomic: TACAAAGATTTCCCATCGAATCAAAGGGCCGCAGGAAAAAGCTGCGTGAGgtaattacat ... tgttttgtagGTCGGCCTTGTGACTGCTATATGCTTCACTTGCTTTACAATCAGATCCGGA
EST: TACAAAGATTTCCCATCGAATCAAAGGGCCGCAGGAAAAAGCTGCGTGAG GTCGGCCTTGTGACTGCTATATGCTTCACTTGCTTTACAATCAGATCCGGA
genomic: TACAAAGATTTCCCATCGAATCAAAGGGCCGCAGGAAAAAGCTGCGTGAGgtaattacat ... tgttttgtagGTCGGCCTTGTGACTGCTATATGCTTCACTTGCTTTACAATCAGATCCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTTCTTGATGCTACAAAGATTTCCCATCGAATCAAAGGGCCGCAGGAAAAAGCTGCGTGAGgtaattacatcagtctctttcacggcatcttatcctactcagctgttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC