1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACGTTTTCAATCTGCTCCCCAATCTAAACGTCCAGGAGCTCTTCAGATCTTTTGTTGgtaagatttcacgcgtttggccaaagttttctctcttagctaagctccgtgtcaaatttttccag
species | Selaginella moellendorffii |
transcript | EFJ21414 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAATCTGCTCCCCAATCTAAACGTCCAGGAGCTCTTCAGATCTTTTGTTG TCAAGACGAACGACATGATGCTCGTCATCTATCTCTCTTCTCTTATCCGAAEST: gi|169103938|gb|FE504275.1|FE504275
genomic: CAATCTGCTCCCCAATCTAAACGTCCAGGAGCTCTTCAGATCTTTTGTTGgtaagatttc ... atttttccagTCAAGACGAACGACATGATGCTCGTCATCTATCTCTCTTCTCTTATCCGAA
EST: CAATCTGCTCCCCAATCTAAACGTCCAGGAGCTCTTCAGATCTTTTGTTG TCAAGACGAACGACATGATGCTCGTCATCTATCTCTCTTCTCTTATCCGAAEST: gi|169063914|gb|FE471269.1|FE471269
genomic: CAATCTGCTCCCCAATCTAAACGTCCAGGAGCTCTTCAGATCTTTTGTTGgtaagatttc ... atttttccagTCAAGACGAACGACATGATGCTCGTCATCTATCTCTCTTCTCTTATCCGAA
EST: CAATCTGCTCCCCAATCTAAACGTCCAGGAGCTCTTCAGATCTTTTGTTG TCAAGACGAACGACATGATGCTCGTCATCTATCTCTCTTCTCTTATCCGAAEST: gi|169057077|gb|FE464133.1|FE464133
genomic: CAATCTGCTCCCCAATCTAAACGTCCAGGAGCTCTTCAGATCTTTTGTTGgtaagatttc ... atttttccagTCAAGACGAACGACATGATGCTCGTCATCTATCTCTCTTCTCTTATCCGAA
EST: CAATCTGCTCCCCAATCTAAACGTCCAGGAACTCTTCAGATCTTTTGTTG TCAAGACGAACGACATGATGCTCGTCATCTATCTCTCTTCTCTTATCCGAA
genomic: CAATCTGCTCCCCAATCTAAACGTCCAGGAGCTCTTCAGATCTTTTGTTGgtaagatttc ... atttttccagTCAAGACGAACGACATGATGCTCGTCATCTATCTCTCTTCTCTTATCCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGTTTTCAATCTGCTCCCCAATCTAAACGTCCAGGAGCTCTTCAGATCTTTTGTTGgtaagatttcacgcgtttggccaaagttttctctcttagctaagctccgtgtcaaatttttccag
- - - - - - - - - - - - - - - - - GGAGCT