1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGGCAGACGTTGTTTAGGTGTAACAGAGTCGAACTTCACGATGAAAGGGAGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTGgtacgtgtggttttttattttgttcgcttattatcttgtctatcaaacttcag
species | Selaginella moellendorffii |
transcript | EFJ19453 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTG GAGCATCTCGATCGTGAACTCGAGAAATGCACCATTCGGATGAGCCCGCTAEST: gi|169030361|gb|FE437824.1|FE437824
genomic: AGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTGgtacgtgtgg ... caaacttcagGAGCATCTCGATCGTGAACTCGAGAAATGCACCATTCGGATGAGCCCGCTA
EST: AGCCACAAACGGAAAAAGAAAGGGCTGAGTTTGAGCTCCAGAAAAGACTG GAGCATCTCGATCGTGAACTCGAGAAATGCACCATTCGGATGAGCCCGCTAEST: gi|169099828|gb|FE500833.1|FE500833
genomic: AGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTGgtacgtgtgg ... caaacttcagGAGCATCTCGATCGTGAACTCGAGAAATGCACCATTCGGATGAGCCCGCTA
EST: AGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTG GAGCATCTCGATCGTGAACTCGAGAAATGCACCATTCGGATGAGCCCGCTAEST: gi|169030362|gb|FE437825.1|FE437825
genomic: AGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTGgtacgtgtgg ... caaacttcagGAGCATCTCGATCGTGAACTCGAGAAATGCACCATTCGGATGAGCCCGCTA
EST: AGCCACAAACGGAAAAAGATAGGGCTGAGTCTGAGCTCCAGAAAAGACTG GAGCATCTCGATCEST: gi|169064865|gb|FE475561.1|FE475561
genomic: AGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTGgtacgtgtgg ... caaacttcagGAGCATCTCGATC
EST: AGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTG GAGCATCTCGATCGTGAACTCGAGAAATGCACCATTCGGATGAGCCCGCTA
genomic: AGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTGgtacgtgtgg ... caaacttcagGAGCATCTCGATCGTGAACTCGAGAAATGCACCATTCGGATGAGCCCGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGCAGACGTTGTTTAGGTGTAACAGAGTCGAACTTCACGATGAAAGGGAGCCACAAACGGAAAAAGAAAGGGCTGAGTCTGAGCTCCAGAAAAGACTGgtacgtgtggttttttattttgttcgcttattatcttgtctatcaaacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA