Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgttagtggcttgatatgttttgttagcttagtaatgtggtgtgcgtgcag

Basic information

species Selaginella moellendorffii
transcript EFJ18540
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169105684|gb|FE508450.1|FE508450
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TTTCACATATTGTTTTGCA
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCA
EST: gi|169107453|gb|FE509141.1|FE509141
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TT-CACATATTGTTTTGCATCTTCTGCGCCGTCGCT
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCT
EST: gi|169107452|gb|FE509140.1|FE509140
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: gi|169105291|gb|FE507628.1|FE507628
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: gi|169102152|gb|FE505778.1|FE505778
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: gi|169105683|gb|FE508449.1|FE508449
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: gi|169049667|gb|FE457759.1|FE457759
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: gi|169049666|gb|FE457758.1|FE457758
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TTTCACATATTGTTTTGCATTTTTTGCGCCGTCGCTCCTCCCATTGTGTTC
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: gi|169102153|gb|FE505779.1|FE505779
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCC
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCC
EST: gi|169051997|gb|FE460336.1|FE460336
EST:     GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG                         TTTCACATATTGTTTTGCATCTTTTGCGCCGTCGCTCCTCCCATTGTGTTC
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 12

GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC




<











<


<