1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGCTGTAAGATCCACCACTCGGTGATTGGATTGAGGTCCTGGATAGCAGAGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTCTATGAGgtgtgtcaatctttctttctttatagtttgttcctctatgaggtgttgcaatctttttttctttatagtttttctttcttctgacgatgcttctctctag
species | Selaginella moellendorffii |
transcript | EFJ17026 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTCTATGAG ACTGACGAGGAAAGAGACGCTCTTCTACTAAAAGGAGGGGTCCCCGTTGGCEST: gi|169054368|gb|FE460813.1|FE460813
genomic: AGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTCTATGAGgtgtgtcaat ... ttctctctagACTGACGAGGAAAGAGACGCTCTTCTACTAAAAGGAGGAGTCCCCGTTGGC
EST: AGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTCTATGAG ACTGACGAGGAAAGAGACGCTCTTCTACTAAAAGGAGGGGTCCCCGTTGGCEST: gi|169049447|gb|FE459853.1|FE459853
genomic: AGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTCTATGAGgtgtgtcaat ... ttctctctagACTGACGAGGAAAGAGACGCTCTTCTACTAAAAGGAGGAGTCCCCGTTGGC
EST: AGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTTTATGAG ACTGACGAGGAAAGAGACGCTCTTCTACTAAAAGGAGGGGTCCCCGTTGGCEST: gi|169088449|gb|FE495495.1|FE495495
genomic: AGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTCTATGAGgtgtgtcaat ... ttctctctagACTGACGAGGAAAGAGACGCTCTTCTACTAAAAGGAGGAGTCCCCGTTGGC
EST: AGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTCTATGAG ACTGACGAGGAAAGAGACGCTCTTCTACTAAAAGGAGGAGTCCCCGTTGGC
genomic: AGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTCTATGAGgtgtgtcaat ... ttctctctagACTGACGAGGAAAGAGACGCTCTTCTACTAAAAGGAGGAGTCCCCGTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGTAAGATCCACCACTCGGTGATTGGATTGAGGTCCTGGATAGCAGAGGATGCGCTGGTGGAAGACGCACTGCTCATGGGTGCCGACTTCTATGAGgtgtgtcaatctttctttctttatagtttgttcctctatgaggtgttgcaatctttttttctttatagtttttctttcttctgacgatgcttctctctag
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA