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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTCGAGTTGGTATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAGgtaatttaagttatggttctttatttttgctcaacagtttgtttaacag

Basic information

species Selaginella moellendorffii
transcript EFJ16604
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ16604 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA11G14090.1 (Glycine max), 5'ss of exon 5
GGCATTCGAGTTGGTATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAGgt---aatttaagttatg-------gttctttatttttgctcaacagtttgtttaacag-----------------------------------------
|||||||| |||||| | | | | ||||||||||||||| ||||||| |||||||||||   |||||  || |||       |  |||    | |   | | | |||  |||   |                                         
GGCATTCGTGTTGGTCTTAACCTTGCCCTGGCCATTGCTCTGCACAATATCCCAGAGgtataaattttggtcatgtaacagagcccttggactatatgctataattttattaggtgaaaaattaacaatgagagaaaaccatcgctccttataaaat

upper sequence: EFJ16604 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA12G06060.1 (Glycine max), 5'ss of exon 6
GGCATTCGAGTTGGTATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAGgta---atttaagttatg-------gttctttatttt-tgctcaacagttt-gtttaacag--------------------------------------------------------------------------------------------------------------------------------------
|||||||| |||||| | | | | || |||||||||||| ||||||| ||||||||||||   ||||  || |||       |  |||||   | |   | | | |||  |||                                                                                                                                           
GGCATTCGTGTTGGTCTTAACCTTGCACTGGCCATTGCTCTGCACAATATCCCAGAGgtataaattttggtcatgtggcaaagccctttagactatatgctataattttatttggtgaaaatataacaataagagaaaaccgtcacaccttataaaattttatgccttttctctgaatattttagtttcattttgttttgtttttattgtaaattttttcctccacataaacaataacaatctgctttccag

upper sequence: EFJ16604 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 7
GGCATTCGAGTTGGTATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAGgtaat----ttaagttatggt-tctttatttttgctcaacagtttgtttaacag----------------------------------------------
||| |||| |||||  ||| ||| || |||||||||||||||||||||||||||||||||      ||   || | || |   | | | || |    |   ||||||  ||                                              
GGCCTTCGGGTTGGACTAAACTTGGCACTGGCCATTGCTTTGCACAACATCCCAGAGgtaggactgttgtcttgtagtataactctgtatgttgtgtatactgtttagaagctatgggttctcttaaacgcttgcaatctgctgtgaatagaagtgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169056774|gb|FE465390.1|FE465390
EST:     GAGTTGGTATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAG                         GGAATCGCCGTCGCTTTGCCGATTTATTTTGCAACCAACAG
genomic: GAGTTGGTATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAGgtaatttaag ... tgtttaacagGGAATCGCCGTCGCTTTGCCGATTTATTTTGCAACCAACAG
EST: gi|169056775|gb|FE465391.1|FE465391
EST:     GAGTTGGTATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAG                         GGAATCGCCGTCGCTTTGCCGATTTATTTTGCAACCAACAG
genomic: GAGTTGGTATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAGgtaatttaag ... tgtttaacagGGAATCGCCGTCGCTTTGCCGATTTATTTTGCAACCAACAG