Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGGATTTTGTAAAAGCGCTTTGTAAAGTTTCGATGGAGGAGCTACGATCTCCAACTGATCCTCGGGTATTCAGCCTCACCAAAATTGTTGAAATATCgtaagtaatctgtggcttctttctggtctcaattttctaaattacgctttttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ15473
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 7
TTGTGGATTTTGTAAAAGCGCTTTGTAAAGTTTCGATGGAGGAGCTACGATCTCCAACTGATCCTCGGGTATTCAGCCTCACCAAAATTGTTGAAATATCgtaagtaatctgtggcttctttctggtctcaattttctaaat-tacgctttttgcag---------------------------
|  | || ||||| ||||| || || |||||||| ||||| ||| ||||||||||| ||||||| ||||| |||||||| || || ||||| |||||| ||||||  |||  |   ||||||  | | ||  |||| |   |   | || | |                               
TAATTGACTTTGTTAAAGCCCTCTGCAAAGTTTCCATGGATGAGTTACGATCTCCATCTGATCCACGGGTCTTCAGCCTAACAAAGATTGTGGAAATAGCgtaag-gatcaatcttttctttacgatatctgttttgtttttgctcactctctcttatttataccctgtttgttgtaatggcag

upper sequence: EFJ15473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 7
TTGTGGATTTTGTAAAAGCGCTTTGTAAAGTTTCGATGGAGGAGCTACGATCTCCAACTGATCCTCGGGTATTCAGCCTCACCAAAATTGTTGAAATATCgtaag--taatctgtggcttctttctggtctc-----aattttct----aaattacgctttttgcag---------------------------------
| || | |||||| || || ||||| |||||||| |||   ||| | |  ||||| || |||||||| |||||||||||||| ||||||||||| ||  ||||||  ||  ||     |||||||  |||||     ||| ||||    ||||| |    ||| ||                                  
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttctttccagtctctctcaaatattctcatcaaatttcaaaattttcattctgtgaatgcactgataaactaattttatttt

upper sequence: EFJ15473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: PP1S264_74V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGTGGATTTTGTAAAAGCGCTTTGTAAAGTTTCGATGGAGGAGCTACGATCTCCAACTGATCCTCGGGTATTCAGCCTCACCAAAATTGTTGAAATATCgtaagtaatctgtggcttctttctggtctcaattttctaaat--tacgctttttgcag-------------------------------------------
||||||| |||||||| ||  | || ||||| || ||||||||  | ||||| |||| ||| ||||||||||||||| | ||||||||||| || ||||||||||| ||      |||| || | || ||| |||| | ||   | |  |||||   |                                           
TTGTGGACTTTGTAAAGGCTTTGTGCAAAGTATCAATGGAGGAATTGCGATCCCCAAGTGACCCTCGGGTATTCAGCTTGACCAAAATTGTGGAGATATCgtaagtgattcact-cttcattattgtttcagttttatgaacagtgcatttttttttgtttattttcctgtggatgtggttgtgcagttttagtttgtgtc

upper sequence: EFJ15473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: PP1S11_55V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGTGGATTTTGTAAAAGCGCTTTGTAAAGTTTCGATGGAGGAGCTACGATCTCCAACTGATCCTCGGGTATTCAGCCTCACCAAAATTGTTGAAATATCgtaagtaatctgtggcttctttctggtctcaattttc-taaattacgc-tttttgcag-------------------------------------------
|||| || ||||| || ||  | || ||||| || ||||||||  | |||||||| | ||||||||| ||||||||| | ||||||||||| || |||||||||||| |      ||||  |    ||||| || |  |||  ||    ||| ||                                              
TTGTTGACTTTGTCAAGGCTTTATGCAAAGTATCAATGGAGGAATTGCGATCTCCTAGTGATCCTCGAGTATTCAGCTTGACCAAAATTGTGGAGATATCgtaagtatttcact-cttcactactctctcagttctagtaatctatatatttctgttatgtgcttgcgtttatccggtgcttgcagttttatgggcgttat