1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GAGAAAGTGTTGAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATGgtacgaaactctgtttgagaaatgaagtttttaccttctggactttggcag
species | Selaginella moellendorffii |
transcript | EFJ15375 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATG GCNATGTT-CCGAATCATATTCCCAATCCTGEST: gi|169094540|gb|FE494505.1|FE494505
genomic: GAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATGgtacgaaact ... actttggcagGC-ATGTTTCCGAATCATATTCCCAATCCTG
EST: GAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATG GCATGTTTCCGAATCATATTCCCA-TCCCTGAG-ACAA-AAAGCAATGNAAEST: gi|169074927|gb|FE482782.1|FE482782
genomic: GAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATGgtacgaaact ... actttggcagGCATGTTTCCGAATCATATTCCCAATCC-TGAGGACAAGAAAGCAATGGAA
EST: GAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATG GCATGTTTCCGAATCATATTCCCAATCCTGAGGACAAGAAAGCAATGGAAGEST: gi|169026292|gb|FE432655.1|FE432655
genomic: GAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATGgtacgaaact ... actttggcagGCATGTTTCCGAATCATATTCCCAATCCTGAGGACAAGAAAGCAATGGAAG
EST: GAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATG GCATGTTTCCGAATCATATTCCCAATCCTGAGGACAAGAAAGCAATGGAAG
genomic: GAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATGgtacgaaact ... actttggcagGCATGTTTCCGAATCATATTCCCAATCCTGAGGACAAGAAAGCAATGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAAGTGTTGAAGCCTCTTGGAGCAGATACGACCGGAAGTCAGTTTTTGGAGCCGGATGgtacgaaactctgtttgagaaatgaagtttttaccttctggactttggcag
- - - - - - - - - TTGGAG
- - - - - - - - - - GGAGCA
- - - - - - - - - - - GAGCAG
- - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG