1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGACTCGGTGGACAAGAACAACAACACTCCATTGCATTACGCTGGTGGCTACGGCCGGAAGGAATGCGTGGAGCTGCTATTGAAGAACGGAGCGGCCGTgtaagtgtctcgaaagcctcttcgttctttcgcgcttggattggactaacttttccttgttccaatag
species | Selaginella moellendorffii |
transcript | EFJ15232 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TACGGCCGGAAGGAATGCGTGGAGCTGCTATTGAAGAACGGAGCGGCCGT GACTGTAAGAAACATGGACAGCAAAACTCCAATGGACGTTGCCAAGCTCAAEST: gi|169111605|gb|FE513962.1|FE513962
genomic: TACGGCCGGAAGGAATGCGTGGAGCTGCTATTGAAGAACGGAGCGGCCGTgtaagtgtct ... gttccaatagGACTGTAAGAAACATGGACAGCAAAACTCCAATGGACGTTGCCAAGCTCAA
EST: TACGGCCGGAAGGAATGCGTGGAGCTGCTTTTGAAGAACGGAGCGGCCGT GACTGTAAGAAACATGGACAGCAAAACTTCAATGGACGTTGCCAAGCTCAAEST: gi|169098672|gb|FE497246.1|FE497246
genomic: TACGGCCGGAAGGAATGCGTGGAGCTGCTATTGAAGAACGGAGCGGCCGTgtaagtgtct ... gttccaatagGACTGTAAGAAACATGGACAGCAAAACTCCAATGGACGTTGCCAAGCTCAA
EST: TACGGCCGGAAGGAATGCGTGGAGCTGCTATTGAAGAACGGAGCGGCCGC GACTGTAAGAAACATGGACAGCAAAACTCCAATGGACGTTGCCAAGCTCAAEST: gi|169052842|gb|FE463599.1|FE463599
genomic: TACGGCCGGAAGGAATGCGTGGAGCTGCTATTGAAGAACGGAGCGGCCGTgtaagtgtct ... gttccaatagGACTGTAAGAAACATGGACAGCAAAACTCCAATGGACGTTGCCAAGCTCAA
EST: TACGGCCGGAAGGAATGCGTGGAGCTGCTATTGAAGAACGGAGCGGCCGT GACTGTAAGAAACATGGACAGCAAAACTCCAATGGACGTTGCCAAGCTCAA
genomic: TACGGCCGGAAGGAATGCGTGGAGCTGCTATTGAAGAACGGAGCGGCCGTgtaagtgtct ... gttccaatagGACTGTAAGAAACATGGACAGCAAAACTCCAATGGACGTTGCCAAGCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACTCGGTGGACAAGAACAACAACACTCCATTGCATTACGCTGGTGGCTACGGCCGGAAGGAATGCGTGGAGCTGCTATTGAAGAACGGAGCGGCCGTgtaagtgtctcgaaagcctcttcgttctttcgcgcttggattggactaacttttccttgttccaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC