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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCGACACTTTCAACACTGCCATCGTTTCTCCAGTCTACTACGTCATGTTCACAGCGCTGACAATCCTCGCGAGCGTGATAATGTTCAAGgtaacacgctcagttctctcctttggacctgatgaatgattcgtgtcaattatagctactcacacag

Basic information

species Selaginella moellendorffii
transcript EFJ15054
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15054 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GRMZM2G120175_T04 (Zea mays), 5'ss of exon 7
GCACTCGACACTTTCAACACTGCCATCGTTTCTCCAGTCTACTACGTCATGTTCACAGCGCTGACAATCCTCGCGAGCGTGATAATGTTCAAGgtaa--cacgctcagttctctcctt-tggacctgatgaatgattcgtgtca-attatagctactcacacag----------------------------------------------------------------------------------------------------------------------
||||| ||||| |||||||| || || || |||||| | || || || ||||||||| | || ||||| || || ||||| ||||||||||||||||     | |  |   |   ||| |  |  |  ||  |  ||| |     | | ||    ||||  ||                                                                                                                       
GCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatttactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: EFJ15054 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GRMZM2G120175_T01 (Zea mays), 5'ss of exon 1
-------GCACTCGACACTTTCAACACTGCCATCGTTTCTCCAGTCTACTACGTCATGTTCACAGCGCTGACAATCCTCGCGAGCGTGATAATGTTCAAGgtaa--cacgctcagttctctcctt-tggacctgatgaatgattcgtgtca-attatagctactcacacag----------------------------------------------------------------------------------------------------------------------
       ||||| ||||| |||||||| || || || |||||| | || || || ||||||||| | || ||||| || || ||||| ||||||||||||||||     | |  |   |   ||| |  |  |  ||  |  ||| |     | | ||    ||||  ||                                                                                                                       
GCTGTAGGCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatttactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: EFJ15054 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 7
GCACTCGACACTTTCAACACTGCCATCGTTTCTCCAGTCTACTACGTCATGTTCACAGCGCTGACAATCCTCGCGAGCGTGATAATGTTCAAGgtaacacgctc---agttctctcctttggacctgatgaatgattcgtgtcaattatagctactcacacag------------------------------
|| || || ||||||||||||||  | || || ||  | || || |||||||||||| | || |||||||| || || ||||||||||||||||||      ||   |    |  | | |    |||     || ||| |   |  |||| ||  | |   |                               
GCTCTTGATACTTTCAACACTGCAGTTGTGTCCCCCATATATTATGTCATGTTCACATCACTTACAATCCTTGCTAGTGTGATAATGTTCAAGgtattgtcttctttatcagtggcatcttatgctggatgctgtttcctccaacctataactttttagcaaatatagcttcatttttaggtttgctttatta