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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaaggttctttatttctcaaaaccgtgctgagcgtggtcttttttctttctcag

Basic information

species Selaginella moellendorffii
transcript EFJ13473
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: LOC_Os03g53760.1 (Oryza sativa), 5'ss of exon 7
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgt---aaggtt-ctttatttctcaaaaccgtgctgagcgtggtcttttttctttctcag-------------------------------
||||  || ||  |  |  |||| ||| | | ||||  ||  || || || || || |||||  |||||||||| ||||||||| | |||||||||||||||   ||| || | || ||||     |   |||||||  | |||||| ||      | |                               
ACAAGTGGTATATTACTACGACGATTGCTCAGTGACAGAAACCTGAATGGAGTAACTCATGTATTTGTTGATGAAATACATGAAAGAGGCATGAATGAAGgttggaagattgcattgtttcctttgaatttgctgag-atcgtctttattaaactcctgataaagttgcattactttgttggtttctcag

upper sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 1
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgt-----aaggttctttatttctcaaaaccgtgctgagcgtggtcttttttctttctcag------------------------------------------
|| || ||| |||||||| |  | ||| ||   ||   || | | || ||||| || ||||| ||||||||||| || ||||| || |||||||||||||||     |  ||  |  | |    ||| | |   | |    | | |   |     |||||                                          
ACTACTGGAGTTCTGTTGCGGAGATTGCTGGTGGATAGAAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAGCGTGGCATGAATGAAGgtctgcaatcgtcataaaataaataaatctgcattcaaaaagttatagctagacactcaggtagacgatttcatgctgaatatttttgtatttttgtgctag

upper sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaag-----gttctttatttctcaaaaccgtgctgagcgtggtc-----ttttttctttctcag------------------------------------
|| || ||| | |||||| |  | ||||||   |||   | | | || ||||| || ||||| ||||||||||| || |||||| | |||||||||||||||  |     ||  |   | | |  |    || || |   || |      | |  || || |                                       
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag

upper sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 7
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgta-----aggttctttatttctcaaaaccgtgctgagcgtggt-cttttttct--ttctcag-------
|| || ||  |  | ||| |  | ||| |    ||    | | | || ||||| || ||||| ||||||||||| || |||||||| || |||||||||||||     |   |  || | |  |||     |  |     || | |||    ||  || |||        
ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgtagctaaataattgttttattccaattttctattttatatgatacttaccactggttttcacatgtcag

upper sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: AT5G04895.1 (Arabidopsis thaliana), 5'ss of exon 7
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaaggttctttatttctcaaaaccgtgctgagcgtggtcttttttctttctcag----------------------------
||||  || || ||  | |||||  || | | ||| |  | | | || || || || |||||  ||||||||||||| |||||| ||||||||||||||||||    ||| ||| ||| |     ||   |      |    |    | ||  |                             
ACAAGTGGTATCCTTCTCAGACGGCTGCTTAGTGATCGCAATTTGAATGGAGTTACACATGTTTTTGTTGATGAGATTCATGAAAGGGGCATGAATGAAGgtacatatctatatatctaatgtatgtttaggtttctgcaaatagagtctcataataatatgcccctcacttcttggttgcag

upper sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: AT1G48650.2 (Arabidopsis thaliana), 5'ss of exon 7
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaaggttctttatttctcaaaaccgtgctgagcgtggtcttt---tttctttctcag-----------------------------
||||| ||  || |  | ||| | ||  |    || |  || || || |||||||| |||||  | ||||||||||| |||||||| || ||||||||||||||  ||   || ||  | |||  |   | |  |   ||  |   |  |  | |||                              
ACAACTGGTGTTTTACTTAGAAGGTTACTTGTGGATCGTAGCCTGAAAGGTGTGACTCATGTCGTAGTTGATGAGATTCATGAACGTGGAATGAATGAAGgtaaattttggtaatttactaaagggaa-taaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcag

upper sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 6
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgtaaggttctttatttctcaaaaccgt-gctgagcgtggtcttttttctttctcag----------------
|| || || ||  | |||||| | ||  |   ||||  || | | |||||||| || ||||| || || |||||||| |||||||| || ||||||||||||||  |||    |  || ||   | |   |  | ||  ||  |||  | |   ||                
ACTACTGGCATATTATTGAGAAGATTACTTGTTGACAGAAATTTGAAGGGTGTAACTCATGTTATCGTCGATGAGATTCATGAACGTGGAATGAATGAAGgtaatattcaaattgactgaatgtcattatttggtgtt-tcaatttcttatggtagtctgcatttatttcag