1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTGGATCGTGAGGGTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAGgttagtcgagtgtcagtgcttggtttgggttctcactcggtttctttgattgatag
species | Selaginella moellendorffii |
transcript | EFJ13073 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGGTACCGAGCGCCCCAGGTTTTCAGAGCAACGTAAGATCAACCCTGAG ACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGTEST: gi|169037658|gb|FE444735.1|FE444735
genomic: GTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAGgttagtcgag ... tgattgatagACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGT
EST: GTGGTACCGAGCGCCCCAGGTTTTCAGAGCAACGTAAGATCAACACTGAG ACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGTEST: gi|169075280|gb|FE483538.1|FE483538
genomic: GTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAGgttagtcgag ... tgattgatagACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGT
EST: GTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAG ACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGTEST: gi|169060933|gb|FE470563.1|FE470563
genomic: GTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAGgttagtcgag ... tgattgatagACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGT
EST: GTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAG ACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGTEST: gi|169058679|gb|FE466888.1|FE466888
genomic: GTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAGgttagtcgag ... tgattgatagACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGT
EST: GTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAG ACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGTEST: gi|169024775|gb|FE433309.1|FE433309
genomic: GTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAGgttagtcgag ... tgattgatagACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGT
EST: GTGGTACCGAGCCCCCCAGATTTTCAGAGCAACGTAAGATCAACCCTGAG ACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGT
genomic: GTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAGgttagtcgag ... tgattgatagACTTTCGGGGACGCTTTTTTGAGGTCTCGTGGTCGGGGAGGCTACAGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTGGATCGTGAGGGTGGTACCGAGCGCCCCAGATTTTCAGAGCAACGTAAGATCAACACTGAGgttagtcgagtgtcagtgcttggtttgggttctcactcggtttctttgattgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA