1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAGATCACGTACCAAAATTTTGAAGATTTGCGATGCTTTTGGAGCCAACCGGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAGgtttggctgcgcgtatcataacttgatttaacgtgattactgttggcag
species | Selaginella moellendorffii |
transcript | EFJ12515 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAG GTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGACEST: gi|169083435|gb|FE494820.1|FE494820
genomic: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAGgtttggctgc ... ctgttggcagGTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGAC
EST: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAG GTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGACEST: gi|169055646|gb|FE465290.1|FE465290
genomic: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAGgtttggctgc ... ctgttggcagGTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGAC
EST: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAG GTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGACEST: gi|169082759|gb|FE486240.1|FE486240
genomic: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAGgtttggctgc ... ctgttggcagGTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGAC
EST: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAG GTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGACEST: gi|169096766|gb|FE499782.1|FE499782
genomic: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAGgtttggctgc ... ctgttggcagGTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGAC
EST: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAG GTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGAC
genomic: GGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAGgtttggctgc ... ctgttggcagGTTTCAGCCAGACTGTCTGAGATGCAAACAACTCTCGATGTTAGTAGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATCACGTACCAAAATTTTGAAGATTTGCGATGCTTTTGGAGCCAACCGGTACCCTTTCCCAGAAGAAACTCTTAAAAGACGTCAAATGAGAATAGAGgtttggctgcgcgtatcataacttgatttaacgtgattactgttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA