1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGACTTCGAGGAAAGGATACCTCGCGGCTAGCTCCGCATCAGCGTATTCACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttcctttcttgcagatttccaatcgtttttttatcattatag
species | Selaginella moellendorffii |
transcript | EFJ10940 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAAT-----CAAG- GCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCGEST: gi|169029497|gb|FE438897.1|FE438897
genomic: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttccttt ... atcattatagGCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
EST: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAAT-----CAAG- GCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCGEST: gi|169041054|gb|FE450354.1|FE450354
genomic: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttccttt ... atcattatagGCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
EST: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAAT-----CAAG- GCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCGEST: gi|169024460|gb|FE434385.1|FE434385
genomic: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttccttt ... atcattatagGCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
EST: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAAT-----CAAG- GCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCGEST: gi|169106433|gb|FE507445.1|FE507445
genomic: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttccttt ... atcattatagGCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
EST: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAAT-----CAAG- GCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCGEST: gi|169069401|gb|FE480524.1|FE480524
genomic: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttccttt ... atcattatagGCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
EST: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGC--G- GC---TCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCGEST: gi|169083532|gb|FE495876.1|FE495876
genomic: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttccttt ... atcattatagGCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
EST: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAAT-----CAAG- GCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCGEST: gi|169069400|gb|FE480523.1|FE480523
genomic: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttccttt ... atcattatagGCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
EST: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAAT-----CAAG- GCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCGEST: gi|169035072|gb|FE444881.1|FE444881
genomic: ACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttccttt ... atcattatagGCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
EST: TTTTGCTCCAATTATGAAT-----CAAG- GCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
genomic: TTTTGCTCCAATTATGAATCAAGGCAAGTgttttccttt ... atcattatagGCGGCTCAGTCATTTCTTTGACGTACATGGCATCTGAAAAAACCATTCCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGACTTCGAGGAAAGGATACCTCGCGGCTAGCTCCGCATCAGCGTATTCACATGTCTCTCTCCTCAGACATTTTGCTCCAATTATGAATCAAGGCAAGTgttttcctttcttgcagatttccaatcgtttttttatcattatag
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