1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTACCGGTGCCGGGGACAAAGTTGGAGTGGCAGGCTGTCAGCAGCACAGTCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgtttcaacttggtttacttggttgcactgattctagtcatgccacttccag
species | Selaginella moellendorffii |
transcript | EFJ09843 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169029979|gb|FE440497.1|FE440497
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCGCGAAGAAGTGGTCGGGGATCAACGTGGGGGTTCEST: gi|169021647|gb|FE428864.1|FE428864
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCGCGAAGAAGTGGTCGGGGATCAACGTGGGGGTTCEST: gi|169025224|gb|FE434135.1|FE434135
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169114117|gb|FE516796.1|FE516796
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169025986|gb|FE435274.1|FE435274
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169083132|gb|FE496428.1|FE496428
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169059648|gb|FE468882.1|FE468882
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169109120|gb|FE511322.1|FE511322
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169083133|gb|FE496429.1|FE496429
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169020671|gb|FE428837.1|FE428837
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCGCGAAGAAGTGGTCGGGGATCAACGTGGGGGTTCEST: gi|169061544|gb|FE469331.1|FE469331
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169033039|gb|FE441373.1|FE441373
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169088445|gb|FE495491.1|FE495491
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCGCGAAGAAGTGGTCGGGGATCAACGTGGGGGTTCEST: gi|169032375|gb|FE440932.1|FE440932
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCGCGAAGAAGTGGTCGGGGATCAACGTGGGGGTTCEST: gi|169099716|gb|FE503113.1|FE503113
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCCGGTTTEST: gi|169030873|gb|FE440312.1|FE440312
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCC-GGTTT
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169044967|gb|FE452735.1|FE452735
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169023053|gb|FE428715.1|FE428715
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169050958|gb|FE458128.1|FE458128
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169078749|gb|FE486531.1|FE486531
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169050959|gb|FE458129.1|FE458129
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169083575|gb|FE495360.1|FE495360
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCCEST: gi|169087053|gb|FE493078.1|FE493078
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
EST: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAG AAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
genomic: TCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgt ... ccacttccagAAATCTTTGCCGGTTTCACGAAGAAGTGGTCGGGGATCAACGTGGGGGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACCGGTGCCGGGGACAAAGTTGGAGTGGCAGGCTGTCAGCAGCACAGTCTCGTTGGGCCGTGGAACACCGTCTATGGAAACCGGCCTGAGCTTAAAGgtacgcccgtttcaacttggtttacttggttgcactgattctagtcatgccacttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT