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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAAgtaagttgtacacgcatatccaaaacgatgaatctccctcttttcgattcccag

Basic information

species Selaginella moellendorffii
transcript EFJ08988
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08988 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 8
GGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAAgtaagttgtacacgcatatc---------caaaacgatgaatct--ccctcttttcgattcccag--------------------------------------------------------------------------------------------------------------
||||||||| || ||||||||||| || ||||||||||||||  |  | || || |||||||| || || || || || ||| | |||| || | ||    |   ||||          | |     |||||       | || |  ||  |  |                                                                                                              
GGGGAAAGTAGCTGAAGGTATTGATTTTGATCGACATTATGGAAGATTAGTGATCATGTTTGGTGTTCCTTTCCAATACACATTAAGCAGgtgaattcactatcaatatttctttatttctattttgtgaatgaaattatgttattaatgtcttgctgttttgcttattgtcatcattgtgactgatatgttttcctttttaattcaagtttcataagttactatttctgcctggtcatgattagacataaatttcgttttgcag