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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAACCAAGCTATCGGGGCTACGGGGCTCGTCAGCGAGGAGTGTAAGATGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagctttggcctctttttactcatgactgtcttgtctcgtag

Basic information

species Selaginella moellendorffii
transcript EFJ06917
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169112995|gb|FE515475.1|FE515475
EST:     TGGACGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169053522|gb|FE461445.1|FE461445
EST:     GTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: GTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169025758|gb|FE433668.1|FE433668
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169058293|gb|FE466034.1|FE466034
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169048944|gb|FE456061.1|FE456061
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169112994|gb|FE515474.1|FE515474
EST:     TGGTGGTTACTCAGTATGGTGACTGGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGGTCTGCACTCTTCGTAA
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCT-GGGGTCTGCACTCTTCGTAA
EST: gi|169034781|gb|FE445634.1|FE445634
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169112989|gb|FE515469.1|FE515469
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169047466|gb|FE455661.1|FE455661
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169080225|gb|FE488904.1|FE488904
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169057176|gb|FE464687.1|FE464687
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 22 (downstream exon)
Score: 93

AATCAACCAAGCTATCGGGGCTACGGGGCTCGTCAGCGAGGAGTGTAAGATGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA




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