1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGAATGCAAAGGATGTCAAGGCACGATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaaaatcaaaaagttttctagattgaattgatggtttttgtgaccag
species | Selaginella moellendorffii |
transcript | EFJ06181 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTGCTGCCCGACATCCTTGCAAACTCAEST: gi|169029682|gb|FE437353.1|FE437353
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTGCTGCCCGACATCCTTGCAAACTCAEST: gi|169020858|gb|FE431962.1|FE431962
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GCAACCCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTGCTGCCCGACATCCTTGCAAACTCAEST: gi|169114202|gb|FE515737.1|FE515737
genomic: GCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCAEST: gi|169034524|gb|FE444571.1|FE444571
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTGCTGCCCGACATCCTTGCAAACTCAEST: gi|169114203|gb|FE515738.1|FE515738
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCAEST: gi|169046220|gb|FE456379.1|FE456379
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTGCTGCCCGACATCCTTGCAAACTCAEST: gi|169067884|gb|FE474755.1|FE474755
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCAEST: gi|169022697|gb|FE429724.1|FE429724
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCAEST: gi|169030555|gb|FE437888.1|FE437888
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCAEST: gi|169054883|gb|FE463487.1|FE463487
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
EST: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAG ATTTTTGCAAAGAAGGGCATCATTGTGCTGCCCGACATCCTTGCAAACTCA
genomic: GATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaa ... ttgtgaccagATTTTTGCAAAGAAGGGCATCATTGTCCTGCCCGACATCCTTGCAAACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAATGCAAAGGATGTCAAGGCACGATTCATCGTAGAAGCAGCAAACCATCCCACTGAGCCCGAGGCGGATGAGgtataggaaaaatcaaaaagttttctagattgaattgatggtttttgtgaccag
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