1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTCACGGTGCAAACTTACGCTGTCAACTCCGATATTTACGACATCCAAGCCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAGgtaaaagtttatgagcgctagagcctttttttcgacttatcggtgttaattgtcgatgcag
species | Selaginella moellendorffii |
transcript | EFJ05715 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAG GACTTTGCTCACTANCA-GTCTGGAGTTTATAAGCACGTTTTCGGTCAAGTEST: gi|169053819|gb|FE463406.1|FE463406
genomic: CCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAGgtaaaagttt ... gtcgatgcagGACTTTGCTCACTA-CAAGTCTGGAGTTTATAAGCACGTTTTCGGTGAAGT
EST: CCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAG GACTTTGCTCACTACAAGTCTGGAGTTTATAAGCACGTTTTCGGTCAAGTCEST: gi|169053818|gb|FE463405.1|FE463405
genomic: CCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAGgtaaaagttt ... gtcgatgcagGACTTTGCTCACTACAAGTCTGGAGTTTATAAGCACGTTTTCGGTGAAGTC
EST: CCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAG GACTTTGCTCACTACAAGTCTGGAGTTTATAAGCACGTTTTCGGTCAAGTCEST: gi|169102210|gb|FE505797.1|FE505797
genomic: CCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAGgtaaaagttt ... gtcgatgcagGACTTTGCTCACTACAAGTCTGGAGTTTATAAGCACGTTTTCGGTGAAGTC
EST: CCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAG GACTTTGCTCACTACAAGTCTGGAGTTTATAAGCACGTTTTCGGTCAAGTC
genomic: CCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAGgtaaaagttt ... gtcgatgcagGACTTTGCTCACTACAAGTCTGGAGTTTATAAGCACGTTTTCGGTGAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCACGGTGCAAACTTACGCTGTCAACTCCGATATTTACGACATCCAAGCCGAGATTTACAAGAATGGGCCCGTGGAAGTTTCCTATACCGTATATGAGgtaaaagtttatgagcgctagagcctttttttcgacttatcggtgttaattgtcgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG