1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAAGCACTTAAAGCTTCCTATTCTGCCAACAACTACAATTGGATCTTTCCCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaagacttttagacaggattctatcttatgcatccgtgcatccgtgtgatcag
species | Selaginella moellendorffii |
transcript | EFJ05611 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCAGCGTEST: gi|169109956|gb|FE511104.1|FE511104
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCCAGCGT
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCAGCGTEST: gi|169044231|gb|FE452961.1|FE452961
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCCAGCGT
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCAGCGTEST: gi|169048326|gb|FE457314.1|FE457314
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCCAGCGT
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCAGCGTEST: gi|169046492|gb|FE457444.1|FE457444
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCCAGCGT
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCAGCGTEST: gi|169065232|gb|FE474056.1|FE474056
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCCAGCGT
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCCAGCGEST: gi|169103053|gb|FE504755.1|FE504755
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCC-AGCG
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCAGCGTEST: gi|169050435|gb|FE458853.1|FE458853
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCCAGCGT
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCAGCGTEST: gi|169060948|gb|FE470578.1|FE470578
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCCAGCGT
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCAGCGTEST: gi|169108856|gb|FE509173.1|FE509173
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCCAGCGT
EST: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAA GATAAGCGAGGAAGAGTACGTGACGGCCATCAAATCTGAAATCGCCAGCGT
genomic: CCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaag ... gtgtgatcagGATAAGCGAGGAAGAGTACGTGAAGGCCATCAAATCTGAAATTGCCAGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGCACTTAAAGCTTCCTATTCTGCCAACAACTACAATTGGATCTTTCCCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaagacttttagacaggattctatcttatgcatccgtgcatccgtgtgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA