1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGATGTTCGTTGCACAGTCCTACAGCAAGAACCTTGGCCTCTACGCCGAAAGAATTGGTGCAATCAACGTCATTCTTCCAACGGCCGACTTGGCAGCAAGgtatgataaaacaaaaatatccaccagttttgtgtgttaaaacactcgtgtttgcttgctttgatcag
species | Selaginella moellendorffii |
transcript | EFJ05582 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGAATTGGTGCAATCAACGTCATTCTTCCAACGGCCGACTTGGCAGCAAG AGTGAAGAGCCAACTTAAGCGACTCGCAAGGCCAATGTATTCGAATCCTCCEST: gi|169112642|gb|FE509415.1|FE509415
genomic: AGAATTGGTGCAATCAACGTCATTCTTCCAACGGCCGACTTGGCAGCAAGgtatgataaa ... ctttgatcagAGTGAAGAGCCAACTTAAGCGACTCGCAAGGCCAATGTATTCGAATCCTCC
EST: AGAATTGGTGCAATCAACGTCATTCTTCCAACGGCCGACTTGGCAGCAAG AGTGAAGAGCCAACTTAAGCGACTCGCAAGGCCAATGTATTCGAATCCTCCEST: gi|169049386|gb|FE459818.1|FE459818
genomic: AGAATTGGTGCAATCAACGTCATTCTTCCAACGGCCGACTTGGCAGCAAGgtatgataaa ... ctttgatcagAGTGAAGAGCCAACTTAAGCGACTCGCAAGGCCAATGTATTCGAATCCTCC
EST: AGAATTGGTGCAATCAACGTCATTCTTCCAACGGCCGACTTGGCAGCAAG AGTGAAGAGCCCACTTAAGCGACTCGCAAGGGCCA-TGTATTCCAATCCTC
genomic: AGAATTGGTGCAATCAACGTCATTCTTCCAACGGCCGACTTGGCAGCAAGgtatgataaa ... ctttgatcagAGTGAAGAGCCAACTTAAGCGACTCGCAAGG-CCAATGTATTCGAATCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGTTCGTTGCACAGTCCTACAGCAAGAACCTTGGCCTCTACGCCGAAAGAATTGGTGCAATCAACGTCATTCTTCCAACGGCCGACTTGGCAGCAAGgtatgataaaacaaaaatatccaccagttttgtgtgttaaaacactcgtgtttgcttgctttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG