1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAGgtattcggcgtggattgcttaattcaagagtttctttttgctgacagacgtcattttag
species | Selaginella moellendorffii |
transcript | EFJ38519 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAG GCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGACEST: gi|169105894|gb|FE503552.1|FE503552
genomic: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAGgtattcggcg ... gtcattttagGCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGAC
EST: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAG GCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGACEST: gi|169081309|gb|FE489793.1|FE489793
genomic: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAGgtattcggcg ... gtcattttagGCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGAC
EST: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAG GCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGACEST: gi|169031261|gb|FE441129.1|FE441129
genomic: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAGgtattcggcg ... gtcattttagGCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGAC
EST: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAG GCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGACEST: gi|169070985|gb|FE478923.1|FE478923
genomic: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAGgtattcggcg ... gtcattttagGCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGAC
EST: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAG GCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGACEST: gi|169070986|gb|FE478924.1|FE478924
genomic: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAGgtattcggcg ... gtcattttagGCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGAC
EST: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAG GCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGAC
genomic: TTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAGgtattcggcg ... gtcattttagGCTGCTGTTAGCGCTTTGCAGGCGCAGCCCGTTGTAAACGCTGTGATCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAGgtattcggcgtggattgcttaattcaagagtttctttttgctgacagacgtcattttag
- - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG