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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTCTGCGATTTTGGATTTGCGAGGGCAATGTCTTGCAACACAATGGTTCTTCGCTCGATCAAAGGTtgtcttttagagttctatacattcatgaaaccgtgacgctatt

Basic information

species Selaginella moellendorffii
transcript EFJ37043
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37043 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 6
CAGCTCTGCGATTTTGGATTTGCGAGGGCAATGTCTTGCAACACAATGGTTCTTCGCTCGATCAAAGGTtg--------tcttttagagttctatacattcatgaaaccgtgacgctatt---------------------------------------------------------------------------------------------------------------
   || || || ||||| ||||||||||| ||||||||||||||||||||| | || || || ||||||          ||    | |  | ||   |   ||  || | || |    |                                                                                                                
---CTTTGTGACTTTGGTTTTGCGAGGGCGATGTCTTGCAACACAATGGTTTTGCGGTCTATAAAAGgtacacacacgctcacacacatatttacgtacatatagaatcatgtcttcttctcatggtttcctactgctgaacacttcatctgtatcacttcaactctatcacttaggacttcggtttactcagcttactcagcttgttattgatatgatttacgcacatag