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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCTTCTAGTTCACTTGTGCTATCTTTTAAAGGAAGTCCCTACTGGATGGCTCCTGAGGTATGTCCACGTTTTCTTTCTTCTAATACTTCTATGACACCgtcacacggctactcctttttaggttttcaagagtaatgcgcaaag

Basic information

species Selaginella moellendorffii
transcript EFJ36960
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ36960 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA06G03970.1 (Glycine max), 5'ss of exon 8
-TATCTTCTAGTTCACTTGTGCTATCTTTTAAAGGAAGTCCCTACTGGATGGCTCCTGAGGTATGTCCACGTTTTCTTTCTTCTA-ATACTTCTAT---GACACCgtcacacggc-tactcctttttaggttttcaagagtaatgcgcaaag
 |  |    |  |||  ||  ||||| || || ||||||||||||||||||||||||||||||  |  |  | || | |  ||||   | || ||    |  |  |    | | | | | |||||||   |  |  |   |  |     |||
CTGACAGAGAAATCATATGAACTATCATTGAAGGGAAGTCCCTACTGGATGGCTCCTGAGgta-atttatttgttgtattatctatggagttttagatgggtaatgagtaatgccgtgcccctttttttttactgtaatttgtttattgaag

upper sequence: EFJ36960 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA04G03870.3 (Glycine max), 5'ss of exon 9
-TATCTTCTAGTTCACTTGTGCTATCTTTTAAAGGAAGTCCCTACTGGATGGCTCCTGAGGTA-TGTCCACGTTTTCTTTCTTCTAATACTTC---TATGACACCgtcacacggctactcctttttaggttttcaagagtaatgcgcaaag
 |  |    |  |||  ||  || || || || |||||||||||||||||||||||||||||| | |    ||| | ||   | |     ||    |  |  |     |      | | |||||||    | | |   ||  ||    |||
CTGACAGAGAAATCATATGAACTTTCATTGAAGGGAAGTCCCTACTGGATGGCTCCTGAGgtaatttattagttgtattatctatggagttttagatggggaatgagtaatgacgtgcccctttttttactgtaatttgt--tgattgaag

upper sequence: EFJ36960 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 5'ss of exon 9
-TATCTTCTAGTTCACTTGTGCTATCTTTTAAAGGAAGTCCCTACTGGATGGCTCCTGAGGTATGTCC---ACGTTTTCTTTCTTCT----AATACTTCTATGACACCgtcacacggctactcctttttaggttttcaagagtaatgcgcaaag-----------------------------------------------------------------
 | ||| ||   ||  || | |  ||||| || ||||| || ||||||||||||||||||||||||     |||| |  ||  || |    | |  ||  ||   ||   || ||   | |   |  |  |  |||     ||| | |  |||                                                                  
ATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAGgtatgtgtcaaacgtataattgattatgctgactgtttacatcttacaaacatactcatccaaatcgtctgcatttagccggtattacttaaatgcagtgatggagctgttagagattcccctcctcaattacgatttaacatgattcttaattggcag