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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGCACTTAAGCTTCGCCAGTTTGGCCTCGACCATACAAACCCCTTGCATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCCgtaagaaatactgtccatttatgcggcttttatcaaatgtttttcttctgctttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ34464
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169078280|gb|FE488883.1|FE488883
EST:     ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCC                         CGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG
genomic: ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCCgtaagaaata ... tgctttgcagCGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG
EST: gi|169067077|gb|FE476015.1|FE476015
EST:     ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCC                         CGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG
genomic: ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCCgtaagaaata ... tgctttgcagCGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG
EST: gi|169069773|gb|FE477490.1|FE477490
EST:     ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCC                         CGTGTGATTTTACTTGATATTG
genomic: ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCCgtaagaaata ... tgctttgcagCGTGTGATTTTACTTGATATTG
EST: gi|169023499|gb|FE431410.1|FE431410
EST:     ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCC                         CGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG
genomic: ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCCgtaagaaata ... tgctttgcagCGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG
EST: gi|169059537|gb|FE468563.1|FE468563
EST:     ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCC                         CGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG
genomic: ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCCgtaagaaata ... tgctttgcagCGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG
EST: gi|169078970|gb|FE489690.1|FE489690
EST:     ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCC                         CGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG
genomic: ATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCCgtaagaaata ... tgctttgcagCGTGTGATTTTACTTGATATTGAAGGCACCACCACTCCCATATCGTTCGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCGCACTTAAGCTTCGCCAGTTTGGCCTCGACCATACAAACCCCTTGCATGGACCAGTGAAGAAACTCAGCCTTGCAGCTCCAAAGAAAAACTATCCCgtaagaaatactgtccatttatgcggcttttatcaaatgtttttcttctgctttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA