Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATTACGGTATCTGCACGAGGAATGCCGGGTCGGCTGCATAGTTCACAGAGACATGCGTCCTAACAACATTCTTCTAACACATGACTACGAACCTATGgtaagttacattgttatgaaagagcacgcgtgatgttccggttttgttccag

Basic information

species Selaginella moellendorffii
transcript EFJ34463
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ34463 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: AT3G13690.1 (Arabidopsis thaliana), 5'ss of exon 6
AGGATTACGGTATCTGCACGAGGAATGCCGGGTCGGCTGCATAGTTCACAGAGACATGCGTCCTAACAACATTCTTCTAACACATGACTACGAACCTATGgtaagttacattgttatgaaagagcacgcgtgatgttccggttttgttccag------------------------------------------------
|||  | |||||||| ||||| || ||| | || ||||| || || |||||||||||||||||||||||||| ||  | || |||||  | || ||  ||||| ||   ||   ||||     || |       ||  | |      ||||                                                 
AGGTCTTCGGTATCTTCACGAAGAGTGCAGAGTTGGCTGTATTGTCCACAGAGACATGCGTCCTAACAACATCCTCATCACTCATGATAATGAGCCACTGgtatgt---ataaatatggtcttgctcattcatcgtaacagcagatatccactgtttcatatgctttttcgtcctgagtcaactttgataatatcatcag

upper sequence: EFJ34463 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: PP1S59_359V6.1 (Physcomitrella patens), 5'ss of exon 5
AGGATTACGGTATCTGCACGAGGAATGCCGGGTCGGCTGCATAGTTCACAGAGACATGCGTCCTAACAACATTCTTCTAACACATGACTACGAACCTATGgtaagttacattgt---tatgaaagagcacgcgtgatgttccggttttgttccag-------------------------------------------------------------
||||||  | ||| |||| ||||| || ||||| || |||||||| ||||||||| ||||||| ||||| ||||| || || || ||||  |||||||||||| ||  | ||      |       | |||    ||||| | ||||  |  | |                                                             
AGGATTGAGATATTTGCATGAGGATTGTCGGGTTGGATGCATAGTGCACAGAGACTTGCGTCCCAACAATATTCTGCTTACTCACGACTTTGAACCTATGgtatgtggcgttccacacactgtttcgaacggtaaatgtttctgtttattgtctgaatggccacatgcctattcctaatgtggttaccgacagcacaagtgttttttggatatcag