1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGATGCTGGAAAAGGAGAACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAGgtgagcgagcaatgtcgtgcaaaaacttctgcccatgtttttcttccaatttttttttttttttttaatttctctcgctctccctctctctcttctttctctatttctctctctcactcgcttgaggatctggtggtcgtgcaaagcaaagtttcctaacttttgtgttacactgactgtctttgcttggcag
species | Selaginella moellendorffii |
transcript | EFJ33688 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAG GCAAGAGAGGTTCATTGAGAATTGGGTGGACGCTCTATCCGATTCACGCGTEST: gi|169054072|gb|FE462307.1|FE462307
genomic: AACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAGgtgagcgagc ... tgcttggcagGCAAGAGAGGTTCATTGAGAATTGGGTGGACGCTCTATCCGATTCACGCGT
EST: AACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAG GCAAGAGAGGTTCATTGAGAATTGGGTGGACGCTCTATCCGATTCACGCGTEST: gi|169109506|gb|FE510291.1|FE510291
genomic: AACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAGgtgagcgagc ... tgcttggcagGCAAGAGAGGTTCATTGAGAATTGGGTGGACGCTCTATCCGATTCACGCGT
EST: AACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAG GCAAGAGAGGTTCATTGAGAATTGGGTGGACGCTCTATCCGATTCACGCGTEST: gi|169054073|gb|FE462308.1|FE462308
genomic: AACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAGgtgagcgagc ... tgcttggcagGCAAGAGAGGTTCATTGAGAATTGGGTGGACGCTCTATCCGATTCACGCGT
EST: AACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAG GCAAGAGAGGTTCATTGAGAATTGGGTGGACGCTCTATCCGATTCACGCGT
genomic: AACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAGgtgagcgagc ... tgcttggcagGCAAGAGAGGTTCATTGAGAATTGGGTGGACGCTCTATCCGATTCACGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATGCTGGAAAAGGAGAACAATTTCGCACAACCTGGCGTGAGGTACAGATCATGGCCAGCTGACAGgtgagcgagcaatgtcgtgcaaaaacttctgcccatgtttttcttccaatttttttttttttttttaatttctctcgctctccctctctctcttctttctctatttctctctctcactcgcttgaggatctggtggtcgtgcaaagcaaagtttcctaacttttgtgttacactgactgtctttgcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA