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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAATTATGCCGTTCAAAGCTATGAGAGAGCGATCGCAGCGCACACGGCGGGTGCCTTCGAGTGGGAAATCGTCCCGgttggtattgagaattttcttctttctggtccatttgactaaatgcttttcag

Basic information

species Selaginella moellendorffii
transcript EFJ29932
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169033459|gb|FE441803.1|FE441803
EST:     GAGCGATCGCAGCGCACACGGCGGGTGCCTTCGAGTGGGAAATCGTCCCG                         GTCGAGGTCCCCGGAGGGAAAGGAAGGCCGTCTACAATTGTTTCCAAGGAC
genomic: GAGCGATCGCAGCGCACACGGCGGGTGCCTTCGAGTGGGAAATCGTCCCGgttggtattg ... tgcttttcagGTCGAGGTCCCCGGAGGGAAAGGAAGGCCGTCTACAATTGTTTCCAAGGAC
EST: gi|169081851|gb|FE487958.1|FE487958
EST:     AGCGATCGCAGCGCACACGGCGGGTGCCTTCGAGTGNNGAA-TCGTCCCG                         GTCGAGGTCCCCGGAGGGAAAGGAAGGCCGTCTACNATTG
genomic: AGCGATCGCAGCGCACACGGCGGGTGCCTTCGAGTGG-GAAATCGTCCCGgttggtattg ... tgcttttcagGTCGAGGTCCCCGGAGGGAAAGGAAGGCCGTCTACAATTG
EST: gi|169081850|gb|FE487957.1|FE487957
EST:     GAGCGATCGCAGCGCACACGGCGGGTGCCTTCGAGTGGGAAATCGTCCCG                         GTCGAGGTCCCCGGAGGGAAAGGAAGGCCGTCTACAATTGTTTCCAAGGAC
genomic: GAGCGATCGCAGCGCACACGGCGGGTGCCTTCGAGTGGGAAATCGTCCCGgttggtattg ... tgcttttcagGTCGAGGTCCCCGGAGGGAAAGGAAGGCCGTCTACAATTGTTTCCAAGGAC
EST: gi|169041424|gb|FE448982.1|FE448982
EST:     AGTGGGAAATCGTCCCG                         GTCGAGGTCCCCGGAGGGAAAGGAAGACCGTCTACAATTGTTTCCAAGGAC
genomic: AGTGGGAAATCGTCCCGgttggtattg ... tgcttttcagGTCGAGGTCCCCGGAGGGAAAGGAAGGCCGTCTACAATTGTTTCCAAGGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 33 (downstream exon)
Score: 16

GATAATTATGCCGTTCAAAGCTATGAGAGAGCGATCGCAGCGCACACGGCGGGTGCCTTCGAGTGGGAAATCGTCCCGgttggtattg ... tgcttttcagGTCGAGGTCCCCGGAGGGAAAGGAAGGCCGTCTACAATTGTTTCCAAGGACGATGGAATTGACAAG




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