1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGGGGCCCTCGTGGAGGAATGATATTTTTCAGGAAAGATCCAGTTTTGGGGCTGGACTTGGAAACCTCTATAAACAATGCAGTATTTCCGGGTCTGCAGgtgagcgctgcttgtctcgggaatggcattttcttactcagtttatccaacag
species | Selaginella moellendorffii |
transcript | EFJ26254 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCTGGACTTGGAAACCTCTATAAACAATGCAGTATTTCCGGGTCTGCAG GGCGGGCCTCACAATCACACCATTGCTGGACTGGCGGTGTGCCTGAAGCATEST: gi|169019089|gb|FE427898.1|FE427898
genomic: GGCTGGACTTGGAAACCTCTATAAACAATGCAGTATTTCCGGGTCTGCAGgtgagcgctg ... tatccaacagGGCGGGCCTCACAATCACACCATTGCTGGACTGGCGGTGTGCCTGAAGCAT
EST: GGCTGGACTTGGAAACCTCTATAAACAATGCAGTATTTCCGGGTCTGCAG GGCGGGCCTCACAATCACACCATTGCTGGACTGGCGGTGTGCCTGAAGCATEST: gi|169059731|gb|FE467795.1|FE467795
genomic: GGCTGGACTTGGAAACCTCTATAAACAATGCAGTATTTCCGGGTCTGCAGgtgagcgctg ... tatccaacagGGCGGGCCTCACAATCACACCATTGCTGGACTGGCGGTGTGCCTGAAGCAT
EST: GGCTGGACTTGGAAACCTCTATAAACAATGCAGTATTTCCGGGTCTGCAG GGCGGGCCTCACAATCACACCATTGCTGGACTGGCGGTGTGCCTGAAGCAT
genomic: GGCTGGACTTGGAAACCTCTATAAACAATGCAGTATTTCCGGGTCTGCAGgtgagcgctg ... tatccaacagGGCGGGCCTCACAATCACACCATTGCTGGACTGGCGGTGTGCCTGAAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGGCCCTCGTGGAGGAATGATATTTTTCAGGAAAGATCCAGTTTTGGGGCTGGACTTGGAAACCTCTATAAACAATGCAGTATTTCCGGGTCTGCAGgtgagcgctgcttgtctcgggaatggcattttcttactcagtttatccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG