1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGAGAAACGGGCGTGGTCTGTGGATTTTTCGCATGCAGACCCGACGAAGCTCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAGgtaggaacagccgtatttctttcttatcatttaaactcaaatccttgtgtgtgtaatccag
species | Selaginella moellendorffii |
transcript | EFJ26072 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAG GAAGCAAGCACTGGAACGATTAAGACCAAAGCCAACGTTTGCTGCGTCCAGEST: gi|169070975|gb|FE477366.1|FE477366
genomic: TCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAGgtaggaacag ... tgtaatccagGAAGCAAGCACTGGAACGATTAAGACCAAAGCCAACGTTTGCTGCGTCCAG
EST: TCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAG GAAGCAAGCACTGGAACGATTAAGACCAAAGCCAACGTTTGCTGCGTCCAGEST: gi|169064398|gb|FE472065.1|FE472065
genomic: TCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAGgtaggaacag ... tgtaatccagGAAGCAAGCACTGGAACGATTAAGACCAAAGCCAACGTTTGCTGCGTCCAG
EST: TCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAG GAAGCAAGCACTGGAACGATTAAGACCAAAGCCAACGTTTGCTGCGTCCAGEST: gi|169038713|gb|FE450158.1|FE450158
genomic: TCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAGgtaggaacag ... tgtaatccagGAAGCAAGCACTGGAACGATTAAGACCAAAGCCAACGTTTGCTGCGTCCAG
EST: TCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAG GAAAGCA-GCACTGGAA
genomic: TCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAGgtaggaacag ... tgtaatccagGAA-GCAAGCACTGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGAAACGGGCGTGGTCTGTGGATTTTTCGCATGCAGACCCGACGAAGCTCGCAAGTGGTAGCGATGATGGAACTGTAAAACTGTGGAGCATAAACCAGgtaggaacagccgtatttctttcttatcatttaaactcaaatccttgtgtgtgtaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA