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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTTTCAGAGAAGGGAGAACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatgcgcaacaaacttcttttactaacatggtattcctag

Basic information

species Selaginella moellendorffii
transcript EFJ25893
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25893 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 6
CTTCTTTCAGAGAAGGGAGAACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaat--gcgcaacaaac-ttcttttactaacatggtattcctag----------------------------------------------------------------
|||||| | ||||| || |||||||||||||||||||| || || || || |||||||||||| | || |||    ||    ||   | || || |  | |   ||   |||   ||                                                                 
CTTCTTGCCGAGAAAGGTGAACTTCCAACAAGATTTGGTTCAGCTACACTGGGAATTCTTCTCCTGCAGgtatccgatcgaagccctatacattttcctgcctccaaattatcattattcatgaatcctccaaggagtgtgagatgcattaattcctggatgtattctgctgatactcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169042163|gb|FE454206.1|FE454206
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
EST: gi|169093899|gb|FE493487.1|FE493487
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
EST: gi|169047127|gb|FE457208.1|FE457208
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
EST: gi|169040292|gb|FE448370.1|FE448370
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
EST: gi|169029732|gb|FE437403.1|FE437403
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG