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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCGTGCTAGAGAAGCCGGAGAAATCAATAAGAGTCTACTGACGCTTGGACGGGTCATAACTGCCCTTGTTGAACATCTCGGCCACATTCCATACAGgttagtgactgactacgaagaaacgaagaaccgtacttactgctttgctaaatataatggtggtttgaacag

Basic information

species Selaginella moellendorffii
transcript EFJ25853
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25853 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: PP1S158_7V6.1 (Physcomitrella patens), 5'ss of exon 6
GGGCGTGCTAGAGAAGCCGGAGAAATCAATAAGAGTCTACTGACGCTTGGACGGGTCATAACTGCCCTTGTTGAACATCTCGGCCACATTCCATACAGgttagtgac-tgactacgaagaaacgaagaaccgtacttactgctttgctaaatataatggtggtttgaacag-------------------
   || ||| ||||||| |||||||| || || ||||| || || |||||||| ||||| ||||||||||| |||||||| || ||  | || ||||||| | |    || |  ||   | |  |     |      | | |   | |   | |  | | | ||    |                     
AATCGGGCTCGAGAAGCTGGAGAAATTAACAAAAGTCTTCTTACTCTTGGACGTGTCATTACTGCCCTTGTCGAACATCTAGGGCATGTACCCTACAGgtgaatcttatgtcagcggccatataacctctctcgtccagtacagagttccctctcctagagcttaattctcttgtcgttaatgtttacag

upper sequence: EFJ25853 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: PP1S6_143V6.1 (Physcomitrella patens), 5'ss of exon 6
GGGCGTGCTAGAGAAGCCGGAGAAATCAATAAGAGTCTACTGACGCTTGGACGGGTCATAACTGCCCTTGTTGAACATCTCGGCCACATTCCATACAGgttagtga--ctgactacgaagaaacgaagaaccgtacttactgctttgctaaatataatggtgg----tttgaacag-----------------------
  ||| ||  | ||| | |||||||||||||| |||||||| ||||||||||| || ||||| || || || || ||  | || ||||| || |||||||     |  || | |  | | ||||    |  | |    | ||       |  | |  || |||    |    |||                        
ATGCGCGCGCGGGAAACTGGAGAAATCAATAAAAGTCTACTTACGCTTGGACGTGTGATAACAGCTCTGGTCGAGCACTTGGGTCACATCCCTTACAGgtagagcattcttaattgggaaaaacatttatgcctctagaatgaaggatgagctttcgtgatggctgttcctcacaattcactcttctttaatgtcacag