1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTTTGCTGGATGCTCTCTGCGGTTTCCAGTTCACCATCACTCACCTCGACGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaatcacttagtgtagctctcaggcttctctaaacgtatgtctcctctctttcag
species | Selaginella moellendorffii |
transcript | EFJ24912 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAG GCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCTEST: gi|169113322|gb|FE515273.1|FE515273
genomic: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
EST: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAGCCAG GCCAATTCAAGGCTATCAACGATGAAGGGATGCCTCACCACCAGAGACCCTEST: gi|169050972|gb|FE458142.1|FE458142
genomic: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
EST: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAGCCAG GCCAATTCAAGGCTATCAACGATGAAGGGATGCCTCACCACCAGAGACCCTEST: gi|169104150|gb|FE507139.1|FE507139
genomic: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
EST: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAG GCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCTEST: gi|169087097|gb|FE496203.1|FE496203
genomic: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
EST: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAGCCAG GCCAATTCAAGGCTATCAACGATGAAGGGATGCCTCACCACCAGAGACCCTEST: gi|169104151|gb|FE507140.1|FE507140
genomic: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
EST: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAG GCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCTEST: gi|169083692|gb|FE494866.1|FE494866
genomic: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
EST: ACCGGGCGAGATTATCAAGCCAG GCCAATTCAAGGCTATCAACGATGAAGGGATGCCTCACCACCAGAGACCCTEST: gi|169112343|gb|FE512919.1|FE512919
genomic: ACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
EST: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAGCCAG GCCAATTCAAGGCTATCAACGATGAAGGGATGCCTCACCACCAGAGACCCTEST: gi|169062696|gb|FE470782.1|FE470782
genomic: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
EST: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAG GCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCTEST: gi|169057318|gb|FE464218.1|FE464218
genomic: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
EST: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAG GCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
genomic: CGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaat ... tctctttcagGCCAATTCAAGGCTATCAACGATGAAGGAATGCCTCACCACCAGAGACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTGCTGGATGCTCTCTGCGGTTTCCAGTTCACCATCACTCACCTCGACGGCAGGCAACTCCTCGTCAAGTCGAGACCGGGCGAGATTATCAAACCAGgtatgcaaatcacttagtgtagctctcaggcttctctaaacgtatgtctcctctctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC