1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATGCCTGTCGTCCTTGTCTGCTATGGTCCAACTCGAGCTTCCTCATGTGAATGTCCTCACGAAGATGGATCTCGTGGCTAAGAAAAAAGACATCGAAGAgtacgtgctacctatccagtatacttacttcgttttcacaattttgtgtgtag
species | Selaginella moellendorffii |
transcript | EFJ18832 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATGTCCTCACGAAGATGGATCTCGTGGCTAAGAAAAAAGACATCGAAGA CTACCTTGACCCTGATCCGGTTTTCTTACTGTCGGAGATGAATGCAAATACEST: gi|169057119|gb|FE464149.1|FE464149
genomic: AATGTCCTCACGAAGATGGATCTCGTGGCTAAGAAAAAAGACATCGAAGAgtacgtgcta ... ttgtgtgtagCTACCTTGACCCTGATCCGGTTTTCTTACTGTCGGAGATGAATGCAAATAC
EST: AATGTCCTCACGAAGATGGATCTCGTGGCCAAGAAAAAAGACATCGAAGA CTACCTTGACCCTGATCCGGTTTTCCTACTGTCGGAGATGAATGCAAATACEST: gi|169057120|gb|FE464150.1|FE464150
genomic: AATGTCCTCACGAAGATGGATCTCGTGGCTAAGAAAAAAGACATCGAAGAgtacgtgcta ... ttgtgtgtagCTACCTTGACCCTGATCCGGTTTTCTTACTGTCGGAGATGAATGCAAATAC
EST: AATGTCCTCACGAAGATGGATCTCGTGGCCAAGAAAAAAGACATCGAAGA CTACCTTGACCCTGATCCGGTTTTCCTACTGTCGGAGATGAATGCAAATAC
genomic: AATGTCCTCACGAAGATGGATCTCGTGGCTAAGAAAAAAGACATCGAAGAgtacgtgcta ... ttgtgtgtagCTACCTTGACCCTGATCCGGTTTTCTTACTGTCGGAGATGAATGCAAATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCCTGTCGTCCTTGTCTGCTATGGTCCAACTCGAGCTTCCTCATGTGAATGTCCTCACGAAGATGGATCTCGTGGCTAAGAAAAAAGACATCGAAGAgtacgtgctacctatccagtatacttacttcgttttcacaattttgtgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA