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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttggaggcaattgtcgtttgctagccacgagggaaatcacacgttccttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ18540
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169105684|gb|FE508450.1|FE508450
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
EST: gi|169107453|gb|FE509141.1|FE509141
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
EST: gi|169113212|gb|FE515186.1|FE515186
EST:     TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTT
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTT
EST: gi|169107452|gb|FE509140.1|FE509140
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
EST: gi|169105291|gb|FE507628.1|FE507628
EST:     TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
EST: gi|169102152|gb|FE505778.1|FE505778
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
EST: gi|169105683|gb|FE508449.1|FE508449
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
EST: gi|169049667|gb|FE457759.1|FE457759
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
EST: gi|169052782|gb|FE463565.1|FE463565
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTA
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTA
EST: gi|169049666|gb|FE457758.1|FE457758
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
EST: gi|169102153|gb|FE505779.1|FE505779
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
EST: gi|169051997|gb|FE460336.1|FE460336
EST:     TTTCCCGGATCATATTTCCTCTGGTACAGACCCCTGTATCGGGCTATGAG                         GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG
genomic: TTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 35 (downstream exon)
Score: 13

GTGTGCAGATATGGTTTCTGGCCATCATCTACATCCTGGCAGGCTTTCCCGGATCATATTTCCTTTGGTACAGGCCCCTGTATCGGGCTATGAGgtgcgttgga ... ttccttgcagGTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG




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