1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCTCTTTGCGCCGCAAGAGAGGAGCACAAAGTGATCTCGATGAAGGACTTCGAGGCAGCTATCGACAGGGTTCTTGGTGGAATGGAGAAGAAGAACAAGgtaagtttaagtggtatcttcttttcttcatacttacaacattggatttctag
species | Selaginella moellendorffii |
transcript | EFJ17143 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCGAGGCAGCTATCGACAGGGTTCTTGGTGGAATGGAGAAGAAAAACAAG GTGATAAGCCCCGAGGAAAGGAGAACAGTTGCGTACCACGAGGCAGGACATEST: gi|169024003|gb|FE436476.1|FE436476
genomic: TCGAGGCAGCTATCGACAGGGTTCTTGGTGGAATGGAGAAGAAGAACAAGgtaagtttaa ... ggatttctagGTGATAAGCCCCGAGGAAAGGAGAACAGTTGCGTACCACGAGGCAGGACAT
EST: TCGAGGCAGCTATCGACAGGGTTCTTGGTGGAATGGAGAAGAAGAACAAG GTGATAAGCCCCGAGGAAAGGAGAACAGTTGCGTACCACGAGGCAGGACATEST: gi|169020849|gb|FE429288.1|FE429288
genomic: TCGAGGCAGCTATCGACAGGGTTCTTGGTGGAATGGAGAAGAAGAACAAGgtaagtttaa ... ggatttctagGTGATAAGCCCCGAGGAAAGGAGAACAGTTGCGTACCACGAGGCAGGACAT
EST: TCGAGGCAGCTATCGACAGGGTTCTTGGTGGAATGGAGAAGAAAAACAAG GTGATAAGCCCCGAGGAAAGGAGAACAGTTGCGTACCACGAGGCAGGACAT
genomic: TCGAGGCAGCTATCGACAGGGTTCTTGGTGGAATGGAGAAGAAGAACAAGgtaagtttaa ... ggatttctagGTGATAAGCCCCGAGGAAAGGAGAACAGTTGCGTACCACGAGGCAGGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCTTTGCGCCGCAAGAGAGGAGCACAAAGTGATCTCGATGAAGGACTTCGAGGCAGCTATCGACAGGGTTCTTGGTGGAATGGAGAAGAAGAACAAGgtaagtttaagtggtatcttcttttcttcatacttacaacattggatttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC