1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCGAAGAACTGAGGAAGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAGgtccgtcttgtgacaaaggagtgaagctttttgctgctgtgttgtttgttctaaacctcttccaaaattctttgtgctccag
species | Selaginella moellendorffii |
transcript | EFJ16760 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAG AATGTAAAGGCAGTGTTTGATGCTGCGATCAAGGTGGTCCTCCAACCTCCAEST: gi|169075482|gb|FE482492.1|FE482492
genomic: AGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAGgtccgtcttg ... tgtgctccagAATGTAAAGGCAGTGTTTGATGCTGCGATCAAGGTGGTCCTCCAACCTCCA
EST: AGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAG AATGTAAAGGCAGTGTTTGATGCTGCGATCAEST: gi|169110406|gb|FE512165.1|FE512165
genomic: AGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAGgtccgtcttg ... tgtgctccagAATGTAAAGGCAGTGTTTGATGCTGCGATCA
EST: AGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAG AATGTAAAGGCAGTGTTTGATGCTGCGATEST: gi|169110405|gb|FE512164.1|FE512164
genomic: AGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAGgtccgtcttg ... tgtgctccagAATGTAAAGGCAGTGTTTGATGCTGCGAT
EST: AGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAG AATGTAAAGGCAGTGTTTGATGCTGCGATCAAGGTGGTCCTCCAACCTCCA
genomic: AGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAGgtccgtcttg ... tgtgctccagAATGTAAAGGCAGTGTTTGATGCTGCGATCAAGGTGGTCCTCCAACCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGAAGAACTGAGGAAGCAAATCGGTGCTGCTGCCTACATCGAGTGTAGCTCGAAAACCCAGCAGgtccgtcttgtgacaaaggagtgaagctttttgctgctgtgttgtttgttctaaacctcttccaaaattctttgtgctccag
- - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - TGCTGC