1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtattttctacatttcgtgaacatatttctcaaagcctcttttgcag
species | Selaginella moellendorffii |
transcript | EFJ16329 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCA-TTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169039372|gb|FE447240.1|FE447240
genomic: GGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169108315|gb|FE511960.1|FE511960
genomic: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: TTGGCA-TTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169102043|gb|FE505747.1|FE505747
genomic: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: TAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169113223|gb|FE515496.1|FE515496
genomic: TAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169045936|gb|FE451753.1|FE451753
genomic: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: GCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169115326|gb|FE517029.1|FE517029
genomic: GCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: TGGCA-TTGTTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169108015|gb|FE513298.1|FE513298
genomic: TGGCATTTG-TTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169066175|gb|FE475168.1|FE475168
genomic: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169108316|gb|FE511961.1|FE511961
genomic: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCAEST: gi|169075796|gb|FE482793.1|FE482793
genomic: TTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
EST: ACCAGAAGTTGGTGTTAGAATCCCTGGAG AAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
genomic: ACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtatt ... tcttttgcagAAACTTAGCAGTGAAGAGGTAGTAGAAATGGTGGCAAAGTTGGAATCCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTTAGACCGGTTCCAAACAGGAAGCAGATTGGCATTTGTTTCAAGGCGGACCAGAAGTTGGTGTTAGAATCCCTGGAGgtagagtattttctacatttcgtgaacatatttctcaaagcctcttttgcag
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