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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTCAGTGACTACATGATCGCTGGAGACGTTCCTGGATGGTATTGTGGCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgcttcctctcttatgcttcatatctctcacacgcctttgcctttctccacag

Basic information

species Selaginella moellendorffii
transcript EFJ15004
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169034412|gb|FE446383.1|FE446383
EST:     GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG                         GTGGACTACATTCTGGGAAAGAACCCGCGGAAGATGAGCTACGTCGTGGGA
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: gi|169075888|gb|FE483340.1|FE483340
EST:     GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG                         GTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: gi|169109199|gb|FE512805.1|FE512805
EST:     GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG                         GTGGACTACATTCTGGGAAAGAACCCGCGGAAGATGAGCTACGTCGTGGGA
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: gi|169064501|gb|FE472584.1|FE472584
EST:     GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG                         GTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: gi|169076552|gb|FE484659.1|FE484659
EST:     GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG                         GTGGACTACATTCTGGGAAAGAACCCGCGGAAGATGAGCTACGTCGTGGGA
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: gi|169063345|gb|FE472179.1|FE472179
EST:     GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG                         GTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 33 (downstream exon)
Score: 42

GTTGTTCAGTGACTACATGATCGCTGGAGACGTTCCTGGATGGTATTGTGGCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGATACGGCAACAAGTATCCCAAGCAAGTACACCACCGAGCGGCATCCATCC




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