1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTCTCGACTTGCTGCCACCGAGTCCCATGGTTTTGGACGACTGGAAGAGGCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtggtgtttccattgatcgcttgaaaatgctgattttgatcccaaatctttgcag
species | Selaginella moellendorffii |
transcript | EFJ14564 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTEST: gi|169073506|gb|FE482635.1|FE482635
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTEST: gi|169063435|gb|FE471437.1|FE471437
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTEST: gi|169039251|gb|FE448328.1|FE448328
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTEST: gi|169064669|gb|FE476054.1|FE476054
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTEST: gi|169110768|gb|FE509836.1|FE509836
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTEST: gi|169063436|gb|FE471438.1|FE471438
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
EST: GCTCTACTCCNACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGAGATGTATGACCCCCAGGGEST: gi|169109410|gb|FE512860.1|FE512860
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGG
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTEST: gi|169047364|gb|FE456197.1|FE456197
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTEST: gi|169109794|gb|FE513841.1|FE513841
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTEST: gi|169074788|gb|FE483748.1|FE483748
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
EST: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAG GATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
genomic: GCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtgg ... atctttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTCGACTTGCTGCCACCGAGTCCCATGGTTTTGGACGACTGGAAGAGGCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgtacaagtggtgtttccattgatcgcttgaaaatgctgattttgatcccaaatctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT