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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGGACCTCATGAAGAAGCACGAGAAGGCATTCTCGGAGATCAAGTGCTATTACAACGACATCACCCAGAACAATCTCGACCTTATCAAGACGCTCAAGgtgacacaaacaagttccattggagtagggcagcagactgacactgccgccagtgtaacctttttag

Basic information

species Selaginella moellendorffii
transcript EFJ12010
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12010 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: EDP00235 (Chlamydomonas reinhardtii), 5'ss of exon 8
CACGGACCTCATGAAGAAGCACGAGAAGGCATTCTCGGAGATCAAGTGCTATTACAACGACATCACCCAGAACAATCTCGACCTTATCAAGACGCTCAAGgtgacacaaacaagttccattggag---tagggcagcagact---gacac----tgccgccagtgtaacctttttag-----------------------
||  || || |||||||||||||||   || ||| | |||||||||  ||| ||||| |||||||| || ||||| || ||||| ||||||||||||||||||           ||     |  |   ||    |||| |||    | |     ||| ||  |   | ||      |                       
CAACGAACTGATGAAGAAGCACGAGCGCGCCTTCGCAGAGATCAAGAACTACTACAATGACATCACACACAACAACCTGGACCTGATCAAGACGCTCAAGgtgctttggtttttttggggggaggctctaaaaaagcaaactctaaatatgctgtgctgcacgacaagccgccggggcttcaggagtggggctgtatcat

upper sequence: EFJ12010 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: PP1S4_340V6.1 (Physcomitrella patens), 5'ss of exon 6
CACGGACCTCATGAAGAAGCACGAGAAGGCATTCTCGGAGATCAAGTGCTATTACAACGACATCACCCAGAACAATCTCGACCTTATCAAGACGCTCAAGgtgacacaaacaagttccattggagtagggcagcagactgacactgccgccagtgtaacctttttag---------------------------------------------------
 |  ||  | ||||| || |||||||| || ||| | || ||||| ||||| |||||||| |||||||| |||||||||||  | ||||  ||  | |||||   | ||  |  |||    |   ||   ||   |||   | |         |  |  |||| | |                                                   
GAGTGAATTGATGAAAAATCACGAGAAAGCTTTCACTGAAATCAAATGCTACTACAACGATATCACCCACAACAATCTCGATTTGATCAGAACTTTGAAGgtaggaaaattatattctgcagatttactacacgtgacctgctcacttattccttaatactttattgcctaccttttcatttaaattcttctcatgattaaatgtttgggtatcacag