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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGGACCTCATGAAGAAGCACGAGAAGGCATTCTCGGAGATCAAGTGCTACTACAACGACATCACCCAGAACAATCTTGACCTTATCAAGACGCTCAAGgtgacacaaataagctccattagagtggggcagcagactgacactgccgccagtgtaaccttttcag

Basic information

species Selaginella moellendorffii
transcript EFJ08890
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08890 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: EDP00235 (Chlamydomonas reinhardtii), 5'ss of exon 8
CACGGACCTCATGAAGAAGCACGAGAAGGCATTCTCGGAGATCAAGTGCTACTACAACGACATCACCCAGAACAATCTTGACCTTATCAAGACGCTCAAGgtgacacaaat-----------aagctccattagagtggggcagcagactgacactgccgccagtgtaaccttttcag-----------------------
||  || || |||||||||||||||   || ||| | |||||||||  ||||||||| |||||||| || ||||| || ||||| ||||||||||||||||||       |           | |||| |  | ||     |   | |    |  ||| ||  |   | ||      |                       
CAACGAACTGATGAAGAAGCACGAGCGCGCCTTCGCAGAGATCAAGAACTACTACAATGACATCACACACAACAACCTGGACCTGATCAAGACGCTCAAGgtgctttggtttttttggggggaggctctaaaaaagcaaa-ctctaaatatgctgtgctgcacgacaagccgccggggcttcaggagtggggctgtatcat

upper sequence: EFJ08890 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: PP1S4_340V6.1 (Physcomitrella patens), 5'ss of exon 6
CACGGACCTCATGAAGAAGCACGAGAAGGCATTCTCGGAGATCAAGTGCTACTACAACGACATCACCCAGAACAATCTTGACCTTATCAAGACGCTCAAGgtgacacaaataagctccattagagtggggcagcagactgacactgccgccagtgtaaccttttcag---------------------------------------------------
 |  ||  | ||||| || |||||||| || ||| | || ||||| |||||||||||||| |||||||| |||||||| ||  | ||||  ||  | |||||   | || ||   ||        |    ||   |||   | |         |  |  ||||   |                                                   
GAGTGAATTGATGAAAAATCACGAGAAAGCTTTCACTGAAATCAAATGCTACTACAACGATATCACCCACAACAATCTCGATTTGATCAGAACTTTGAAGgtaggaaaattatattctgcagatttactacacgtgacctgctcacttattccttaatactttattgcctaccttttcatttaaattcttctcatgattaaatgtttgggtatcacag