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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATGTGGAAATACCAGCATGTTGTGGGACATCACTCTTTTACAAACGTTCACAACTATGATCCTGATATCCgtaagtttcctgttcttttttcaccgcctcctgtgaacttcgtagctttgtgtataccag

Basic information

species Selaginella moellendorffii
transcript EFJ07477
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ07477 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: PP1S83_225V6.2 (Physcomitrella patens), 5'ss of exon 8
TTTCATGTGGAAATACCAGCATGTTGTGGGACATCACTCTTTTACAAACGTTCACAACTATGATCCTGATATCCgtaagtttc-ctgttcttttttcaccgcctc-ctgtgaacttcgtagctttgtgtataccag--------------------------------------
 |||||||||| | | || || ||||||||||||||||| |||||||| ||  ||||||| ||||||||||| |||| ||||   |     ||||   || ||    | |  | ||  |  ||   | ||  |                                         
CTTCATGTGGAGACAGCAACACGTTGTGGGACATCACTCGTTTACAAATGTGGACAACTACGATCCTGATATTCgtatgttttgttacatcttttatgccaccctgttttatagtttctgcctcactatacgcttcttggatcccattgtccctgtacaagttcaacgtcacag