Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATTACGGTATCTGCACGAGGAATGCCGAGTCGGCTGCATTGTTCACAGAGACATGCGTCCTAACAACATTCTTCTAACACATGACTACGAACCTATGgtaagttgcattgttatgaaagagcacgcgtgaagttccggttttgttccag

Basic information

species Selaginella moellendorffii
transcript EFJ05818
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ05818 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: AT3G13690.1 (Arabidopsis thaliana), 5'ss of exon 6
AGGATTACGGTATCTGCACGAGGAATGCCGAGTCGGCTGCATTGTTCACAGAGACATGCGTCCTAACAACATTCTTCTAACACATGACTACGAACCTATGgtaagttgcattgttatgaaagagcacgcgtgaagttccggttttgttccag------------------------------------------------
|||  | |||||||| ||||| || ||| |||| ||||| ||||| |||||||||||||||||||||||||| ||  | || |||||  | || ||  |||||   || ||   ||||     || |       ||  | |      ||||                                                 
AGGTCTTCGGTATCTTCACGAAGAGTGCAGAGTTGGCTGTATTGTCCACAGAGACATGCGTCCTAACAACATCCTCATCACTCATGATAATGAGCCACTGgta---tgtataaatatggtcttgctcattcatcgtaacagcagatatccactgtttcatatgctttttcgtcctgagtcaactttgataatatcatcag