1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATTTTAAGATCCAGAACATTGTTGGCTCCTGCGACGTTAAGTTCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtgcttcctttgtcacacttatactcttttctcttttgcgggtcttatcactaaagttttgtgcag
species | Selaginella moellendorffii |
transcript | EFJ04980 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169034024|gb|FE444214.1|FE444214
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169065615|gb|FE476181.1|FE476181
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169081802|gb|FE488260.1|FE488260
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169078386|gb|FE488261.1|FE488261
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169027385|gb|FE432682.1|FE432682
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGEST: gi|169034025|gb|FE444215.1|FE444215
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGEST: gi|169027384|gb|FE432681.1|FE432681
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169044778|gb|FE451922.1|FE451922
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169027778|gb|FE433238.1|FE433238
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169108645|gb|FE509768.1|FE509768
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169108646|gb|FE509769.1|FE509769
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAAACAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAGEST: gi|169065616|gb|FE476182.1|FE476182
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
EST: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGC TACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
genomic: TCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtg ... ttttgtgcagTACGAACCAGAGCTGTTCCCCGGATTGATCTACCGAATGAAGCAGCCTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTTAAGATCCAGAACATTGTTGGCTCCTGCGACGTTAAGTTCCCGATCAGATTGGAGGGCCTGGCGTACGCTCACGGTCACTTCTCAAGCgtaagtcgtgcttcctttgtcacacttatactcttttctcttttgcgggtcttatcactaaagttttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG